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Run #34 — ONT Long-Read Transcriptomics (IsoQuant)

failed PID 18085822.aqua

Started: 2026-02-27 09:32:14

Pipeline failed. Check job logs or the pipeline worker log.

ISA Context

Investigation	Decoding DNA Methylation Dynamics in the Cotton Bollworm (Helicoverpa armigera)
Study	Tissue-specific long-read transcriptome profiling of Helicoverpa armigera pupa
Project	Helicoverpa full length isoform analysis
Process	—

Pipeline Configuration

Pipeline	CWL cwltool + Singularity
Workflow Path	`/work/cyberomics/ont-transcriptomics/ont_transcriptomics.cwl`
Workflow Name	ONT Transcriptomics (IsoQuant + TransDecoder)
Description	Long-read transcriptomics: IsoQuant for transcript discovery and quantification, gffread for FASTA extraction, TransDecoder for ORF prediction.
Container Image	`/work/cyberomics/ont-transcriptomics/isoquant_3.6.0--hdfd78af_0.sif`
Aqua Work Dir	`/home/dudleyk/cwl_run_20260226_233017`

Notes

Combined body and head analysis