Data Transformation: Functional Annotation (TransDecoder + Pfam + SwissProt) (Run #108)
Auto-created from analysis run #108 (isoseq-functional pipeline)
Status
Completed
✓
Files
0
📎
Team
0
👥
Used in Studies
1
🔬
Assay Workflow:
PacBio IsoSeq sequencing of C57 mouse RNA (I-K1, Sequel I)
(sequencing assay → this data transformation)
Process Details
- Process ID
#126- Category
- Data_transformation
- Process Date
- March 6, 2026
- Created
- March 17, 2026 am 02:05
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Linked Sequencing Runs 1
| Platform | Run | Samples | Linked | |
|---|---|---|---|---|
| Nanopore | Run #61 | 6 | 2026-02-21 17:40:01 | View |
Source Samples
- Sample #370
- Sample #371
- Sample #372
- Sample #373
- Sample #374
- Sample #375
Workflow Inputs
upstream:
IsoSeq Annotation (Map + Collapse + SQANTI3) #98
| Input | File | Description |
|---|---|---|
| Corrected transcripts | mouse_all_2017_corrected.fasta |
SQANTI3-corrected isoform sequences |
| Classification | mouse_all_2017_classification.txt |
SQANTI3 isoform classification |
Output Files
View Full Results
| File | Format | Size |
|---|---|---|
isoform_annotations.tsv |
text/tab-separated-values | 4.4 MB |
gene_functional_summary.tsv |
text/tab-separated-values | 607.2 KB |
mouse_all_2017_corrected.fasta.transdecoder.cds |
text/plain | 33.4 MB |
mouse_all_2017_corrected.fasta.transdecoder.bed |
text/plain | 2.4 MB |
mouse_all_2017_corrected.fasta.transdecoder.gff3 |
text/plain | 11.8 MB |
blastp.tsv |
text/tab-separated-values | 3.3 MB |
mouse_all_2017_corrected.fasta.transdecoder.pep |
text/plain | 12.6 MB |
rep_pfam.tsv |
text/tab-separated-values | 530.2 KB |
rep_besthit.tsv |
text/tab-separated-values | 2.8 MB |
pfam.domtblout |
application/octet-stream | 13.7 MB |
results_summary.json |
application/json | 2.5 KB |
Pipeline / Analysis Details
Analysis Run
- Run
- #108 — Functional Annotation (TransDecoder + Pfam + SwissProt)
- Status
- succeeded
- Completed
- 2026-03-06 11:39:16
- Pipeline
isoseq-functional
Description
Auto-created from analysis run #108 (isoseq-functional pipeline)
Attached Files
No files attached.
Review History
No reviews requested yet.
Electronic Signatures
No signatures yet.
Approval Status
Not Reviewed
Activity History
No activity recorded.
Comments 0
No comments yet.