Data Transformation: ONT Long-Read Transcriptomics (IsoQuant) (Run #46)
Auto-created from analysis run #46 (cwl pipeline)
Status
Completed
✓
Files
0
📎
Team
0
👥
Used in Studies
1
🔬
Assay Workflow:
Nanopore PCR-cDNA sequencing of C57/DBA mouse RNA (run 3)
(sequencing assay → this data transformation)
Process Details
- Process ID
#146- Category
- Data_transformation
- Process Date
- March 1, 2026
- Created
- March 17, 2026 am 03:36
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Workflow Inputs
| Input | File | Description |
|---|---|---|
| Fastq | input.fastq.gz |
CWL input file |
| Reference | Mus_musculus.GRCm39.dna.primary_assembly.fa |
CWL input file |
| Annotation | Mus_musculus.GRCm39.113.gtf |
CWL input file |
Output Files
View Full Results
| File | Format | Size |
|---|---|---|
job.yml |
text/yaml | 310 B |
OUT.transcript_models.gtf |
text/plain | 35.1 MB |
transcripts.fa.transdecoder.gff3 |
text/plain | 9.4 MB |
transcripts.fa.transdecoder.pep |
application/octet-stream | 6.3 MB |
OUT.transcript_model_counts.tsv |
text/tab-separated-values | 301.8 KB |
OUT.extended_annotation.gtf |
text/plain | 385.6 MB |
OUT.read_assignments.tsv.gz |
application/octet-stream | 25.6 MB |
OUT.transcript_counts.tsv |
text/tab-separated-values | 6.4 MB |
transcripts.fa.transdecoder.cds |
application/octet-stream | 15.3 MB |
OUT.gene_counts.tsv |
text/tab-separated-values | 1.8 MB |
results_summary.json |
application/json | 13.5 KB |
Pipeline / Analysis Details
Analysis Run
- Run
- #46 — ONT Long-Read Transcriptomics (IsoQuant)
- Status
- succeeded
- Completed
- 2026-03-01 12:35:01
- Pipeline
cwl
Description
Auto-created from analysis run #46 (cwl pipeline)
Attached Files
No files attached.
Review History
No reviews requested yet.
Electronic Signatures
No signatures yet.
Approval Status
Not Reviewed
Activity History
No activity recorded.
Comments 0
No comments yet.