Data Transformation: ONT Isoform Functional Annotation (superseded) (Run #49)
Auto-created from analysis run #49 (cwl pipeline)
Status
Completed
✓
Files
0
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Team
0
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Used in Studies
1
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Assay Workflow:
Nanopore PCR-cDNA sequencing of C57/DBA mouse RNA (run 3)
(sequencing assay → this data transformation)
Process Details
- Process ID
#149- Category
- Data_transformation
- Process Date
- March 1, 2026
- Created
- March 17, 2026 am 03:36
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Workflow Inputs
upstream:
ONT Long-Read Transcriptomics (IsoQuant) #42
| Input | File | Description |
|---|---|---|
| Pep | transcripts.fa.transdecoder.pep |
CWL input file |
| Td Gff3 | transcripts.fa.transdecoder.gff3 |
CWL input file |
| Transcript Models | OUT.transcript_models.gtf |
CWL input file |
| Extended Annotation | OUT.extended_annotation.gtf |
CWL input file |
| Hmm | Pfam-A.hmm |
CWL input file |
| Swissprot | uniprot_sprot.fasta |
CWL input file |
Output Files
View Full Results
| File | Format | Size |
|---|---|---|
job.yml |
text/yaml | 608 B |
isoform_annotations.tsv |
text/tab-separated-values | 2.3 MB |
gene_functional_summary.tsv |
text/tab-separated-values | 314.9 KB |
blastp.with_title.tsv |
text/tab-separated-values | 1.6 MB |
pfam.domtblout |
application/octet-stream | 22 MB |
results_summary.json |
application/json | 1212.9 KB |
Pipeline / Analysis Details
Analysis Run
- Run
- #49 — ONT Isoform Functional Annotation (superseded)
- Status
- succeeded
- Completed
- 2026-03-01 14:06:25
- Pipeline
cwl
Description
Auto-created from analysis run #49 (cwl pipeline)
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