Data Transformation: ONT Isoform Functional Annotation (superseded) (Run #50)
Auto-created from analysis run #50 (cwl pipeline)
Status
Completed
✓
Files
0
📎
Team
0
👥
Used in Studies
1
🔬
Assay Workflow:
Nanopore PCR-cDNA sequencing of C57/DBA mouse RNA (run 3)
(sequencing assay → this data transformation)
Process Details
- Process ID
#150- Category
- Data_transformation
- Process Date
- March 1, 2026
- Created
- March 17, 2026 am 03:36
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Workflow Inputs
upstream:
ONT Long-Read Transcriptomics (IsoQuant) #43
| Input | File | Description |
|---|---|---|
| Pep | transcripts.fa.transdecoder.pep |
CWL input file |
| Td Gff3 | transcripts.fa.transdecoder.gff3 |
CWL input file |
| Transcript Models | OUT.transcript_models.gtf |
CWL input file |
| Extended Annotation | OUT.extended_annotation.gtf |
CWL input file |
| Hmm | Pfam-A.hmm |
CWL input file |
| Swissprot | uniprot_sprot.fasta |
CWL input file |
Output Files
View Full Results
| File | Format | Size |
|---|---|---|
job.yml |
text/yaml | 608 B |
isoform_annotations.tsv |
text/tab-separated-values | 1.5 MB |
gene_functional_summary.tsv |
text/tab-separated-values | 226.6 KB |
blastp.with_title.tsv |
text/tab-separated-values | 1 MB |
pfam.domtblout |
application/octet-stream | 13.1 MB |
results_summary.json |
application/json | 648.7 KB |
Pipeline / Analysis Details
Analysis Run
- Run
- #50 — ONT Isoform Functional Annotation (superseded)
- Status
- succeeded
- Completed
- 2026-03-01 13:44:13
- Pipeline
cwl
Description
Auto-created from analysis run #50 (cwl pipeline)
Attached Files
No files attached.
Review History
No reviews requested yet.
Electronic Signatures
No signatures yet.
Approval Status
Not Reviewed
Activity History
No activity recorded.
Comments 0
No comments yet.