Data Transformation: ONT Long-Read Transcriptomics (IsoQuant) (Run #55)
Auto-created from analysis run #55 (cwl pipeline)
Status
Completed
✓
Files
0
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Team
0
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Used in Studies
1
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Assay Workflow:
Nanopore PCR-cDNA sequencing of C57/DBA mouse RNA (run 1)
(sequencing assay → this data transformation)
Process Details
- Process ID
#155- Category
- Data_transformation
- Process Date
- March 1, 2026
- Created
- March 17, 2026 am 03:36
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Workflow Inputs
| Input | File | Description |
|---|---|---|
| Fastq | input.fastq.gz |
CWL input file |
| Reference | GRCm39.primary_assembly.genome.fa |
CWL input file |
| Annotation | gencode.vM35.annotation.gtf |
CWL input file |
Output Files
View Full Results
| File | Format | Size |
|---|---|---|
job.yml |
text/yaml | 304 B |
OUT.transcript_models.gtf |
text/plain | 51.2 MB |
transcripts.fa.transdecoder.gff3 |
text/plain | 13.7 MB |
transcripts.fa.transdecoder.pep |
application/octet-stream | 8.9 MB |
OUT.transcript_model_counts.tsv |
text/tab-separated-values | 458.2 KB |
OUT.extended_annotation.gtf |
text/plain | 316 MB |
OUT.read_assignments.tsv.gz |
application/octet-stream | 70.8 MB |
OUT.transcript_counts.tsv |
text/tab-separated-values | 3.7 MB |
transcripts.fa.transdecoder.cds |
application/octet-stream | 21.3 MB |
OUT.gene_counts.tsv |
text/tab-separated-values | 1.4 MB |
results_summary.json |
application/json | 6 KB |
Pipeline / Analysis Details
Analysis Run
- Run
- #55 — ONT Long-Read Transcriptomics (IsoQuant)
- Status
- succeeded
- Completed
- 2026-03-01 17:51:30
- Pipeline
cwl
Description
Auto-created from analysis run #55 (cwl pipeline)
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Not Reviewed
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