Data Transformation: IsoSeq Clustering (Refine + Cluster) (Run #84)
Auto-created from analysis run #84 (cwl pipeline)
Status
Completed
✓
Files
0
📎
Team
0
👥
Used in Studies
1
🔬
Assay Workflow:
PacBio IsoSeq sequencing of C57 mouse RNA (I-K1, Sequel I)
(sequencing assay → this data transformation)
Process Details
- Process ID
#176- Category
- Data_transformation
- Process Date
- March 4, 2026
- Created
- March 17, 2026 am 03:36
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Workflow Inputs
upstream:
PacBio CCS (Subreads → HiFi) #74
,
PacBio CCS (Subreads → HiFi) #76
| Input | File | Description |
|---|---|---|
| Bam Files | c57_combined.ccs.bam |
CWL input file |
| Primers | primers_clontech.fasta |
CWL input file |
Output Files
View Full Results
| File | Format | Size |
|---|---|---|
job.yml |
text/yaml | 270 B |
clustered.hq.bam |
application/octet-stream | 20.4 MB |
clustered.lq.bam |
application/octet-stream | 2.9 KB |
clustered.cluster_report.csv |
text/csv | 9.2 MB |
clustered.cluster |
application/octet-stream | 11.7 MB |
flnc.filter_summary.report.json |
application/json | 819 B |
flnc.bam |
application/octet-stream | 579.6 MB |
clustered.hq.bam.pbi |
application/octet-stream | 133.3 KB |
demux_primers.lima.summary |
application/octet-stream | 916 B |
flnc.bam.pbi |
application/octet-stream | 2.6 MB |
clustered.lq.bam.pbi |
application/octet-stream | 86 B |
results_summary.json |
application/json | 277 B |
Pipeline / Analysis Details
Analysis Run
- Run
- #84 — IsoSeq Clustering (Refine + Cluster)
- Status
- succeeded
- Completed
- 2026-03-04 23:07:18
- Pipeline
cwl
Description
Auto-created from analysis run #84 (cwl pipeline)
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Not Reviewed
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