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Data Transformation: IsoSeq Clustering (Refine + Cluster) (Run #88)

Auto-created from analysis run #88 (cwl pipeline)

Status
Completed
✓
Files
0
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Team
0
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Used in Studies
1
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Assay Workflow: PacBio IsoSeq sequencing of C57 mouse RNA (I-K1, Sequel I) (sequencing assay → this data transformation)
Process Details
Process ID
#180
Category
Data_transformation
Process Date
March 5, 2026
Created
March 17, 2026 am 03:36
Locked
Yes
Used in 1 research study:
Linked Sequencing Runs 1
Platform Run Samples Linked
Nanopore Run #61 6 2026-02-21 17:40:01 View
Source Samples
Workflow Inputs upstream: PacBio CCS (Subreads → HiFi) #74 , PacBio CCS (Subreads → HiFi) #75 , PacBio CCS (Subreads → HiFi) #76 , PacBio CCS (Subreads → HiFi) #77
Input File Description
Bam Files all_2017.ccs.bam CWL input file
Primers primers_clontech.fasta CWL input file
Output Files View Full Results
File Format Size
job.yml text/yaml 262 B
clustered.hq.bam application/octet-stream 40.4 MB
clustered.lq.bam application/octet-stream 11.1 KB
clustered.cluster_report.csv text/csv 20.3 MB
clustered.cluster application/octet-stream 25.6 MB
flnc.filter_summary.report.json application/json 819 B
flnc.bam application/octet-stream 1.17 GB
clustered.hq.bam.pbi application/octet-stream 251.6 KB
demux_primers.lima.summary application/octet-stream 919 B
flnc.bam.pbi application/octet-stream 5.3 MB
clustered.lq.bam.pbi application/octet-stream 136 B
results_summary.json application/json 277 B
Pipeline / Analysis Details
Analysis Run
Run
#88 — IsoSeq Clustering (Refine + Cluster)
Status
succeeded
Completed
2026-03-05 09:33:07
Pipeline
cwl
Description
Auto-created from analysis run #88 (cwl pipeline)
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