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Data Transformation: IsoSeq Annotation (Map + Collapse + SQANTI3) (Run #93)

Auto-created from analysis run #93 (isoseq-annotation pipeline)

Status
Completed
✓
Files
0
📎
Team
0
👥
Used in Studies
1
🔬
Assay Workflow: PacBio IsoSeq sequencing of DBA mouse RNA (K7, 4 SMRT cells, Sequel I) (sequencing assay → this data transformation)
Process Details
Process ID
#185
Category
Data_transformation
Process Date
March 5, 2026
Created
March 17, 2026 am 03:36
Locked
Yes
Used in 1 research study:
Workflow Inputs upstream: IsoSeq Clustering (Refine + Cluster) #83
Input File Description
HQ consensus reads clustered.hq.bam High-quality clustered isoforms from IsoSeq
Reference genome GRCm39.primary_assembly.genome.fa Genome assembly FASTA
Gene annotation annotation.gtf Reference gene annotation
Output Files View Full Results
File Format Size
mouse_dba_k7_corrected.gtf text/plain 9.1 MB
mouse_dba_k7_classification.txt text/plain 6.7 MB
collapsed.fasta text/plain 24.1 MB
mouse_dba_k7_corrected.gtf.cds.gff text/plain 18.9 MB
mouse_dba_k7_corrected.genePred application/octet-stream 2.8 MB
unknown_strand.gtf text/plain 0 B
mouse_dba_k7_junctions.txt text/plain 10 MB
collapsed.flnc_count.txt text/plain 122.6 KB
mouse_dba_k7_SQANTI3_report.html text/html 6.1 MB
collapsed.gff text/plain 9.1 MB
mapped.bam.bai application/octet-stream 1.3 MB
mouse_dba_k7.params.txt text/plain 813 B
refAnnotation_mouse_dba_k7.genePred application/octet-stream 32.1 MB
collapsed.report.json application/json 703 B
collapsed.abundance.txt text/plain 173.7 KB
mapped.bam application/octet-stream 9.5 MB
collapsed.group.txt text/plain 364 KB
mouse_dba_k7_corrected.fasta text/plain 24 MB
mouse_dba_k7_corrected.faa text/plain 4.5 MB
collapsed.read_stat.txt text/plain 4.8 MB
seq_bin_3 application/octet-stream 6.7 MB
seq_bin_1 application/octet-stream 7.9 MB
GMST_tmp.fnn application/octet-stream 13 MB
GeneMark_hmm.mod application/octet-stream 190.6 KB
seq_bin_2.mod application/octet-stream 63.4 KB
GMST_tmp application/octet-stream 2.7 MB
seq_bin_3.mod application/octet-stream 63.4 KB
seq_bin_1.mod application/octet-stream 63.4 KB
gms.log application/octet-stream 15.7 KB
GMST_tmp.faa text/plain 4.6 MB
seq_bin_2 application/octet-stream 9.1 MB
sj.rts.results.tsv text/tab-separated-values 158.1 KB
results_summary.json application/json 2.4 KB
Pipeline / Analysis Details
Analysis Run
Run
#93 — IsoSeq Annotation (Map + Collapse + SQANTI3)
Status
succeeded
Completed
2026-03-05 09:18:52
Pipeline
isoseq-annotation
Description
Auto-created from analysis run #93 (isoseq-annotation pipeline)
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