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Data Transformation: IsoSeq Annotation (Map + Collapse + SQANTI3) (Run #96)

Auto-created from analysis run #96 (isoseq-annotation pipeline)

Status
Completed
✓
Files
0
📎
Team
0
👥
Used in Studies
1
🔬
Assay Workflow: PacBio IsoSeq sequencing of C57 mouse RNA (I-K1, Sequel I) (sequencing assay → this data transformation)
Process Details
Process ID
#188
Category
Data_transformation
Process Date
March 5, 2026
Created
March 17, 2026 am 03:36
Locked
Yes
Used in 1 research study:
Workflow Inputs upstream: IsoSeq Clustering (Refine + Cluster) #86
Input File Description
HQ consensus reads clustered.hq.bam High-quality clustered isoforms from IsoSeq
Reference genome GRCm39.primary_assembly.genome.fa Genome assembly FASTA
Gene annotation annotation.gtf Reference gene annotation
Output Files View Full Results
File Format Size
mouse_all_5_smrt_cells_combined_junctions.txt text/plain 28.5 MB
collapsed.fasta text/plain 72.8 MB
mouse_all_5_smrt_cells_combined_corrected.fasta text/plain 72.5 MB
mouse_all_5_smrt_cells_combined_SQANTI3_report.html text/html 7.6 MB
unknown_strand.gtf text/plain 0 B
mouse_all_5_smrt_cells_combined.params.txt text/plain 832 B
collapsed.flnc_count.txt text/plain 328.5 KB
collapsed.gff text/plain 25.5 MB
mapped.bam.bai application/octet-stream 1.3 MB
mouse_all_5_smrt_cells_combined_corrected.gtf.cds.gff text/plain 52.9 MB
collapsed.report.json application/json 704 B
mouse_all_5_smrt_cells_combined_corrected.genePred application/octet-stream 7.7 MB
collapsed.abundance.txt text/plain 462.3 KB
mouse_all_5_smrt_cells_combined_corrected.faa text/plain 12.9 MB
mapped.bam application/octet-stream 31.1 MB
refAnnotation_mouse_all_5_smrt_cells_combined.genePred application/octet-stream 32.1 MB
collapsed.group.txt text/plain 1.2 MB
mouse_all_5_smrt_cells_combined_corrected.gtf text/plain 25.5 MB
mouse_all_5_smrt_cells_combined_classification.txt text/plain 18.8 MB
collapsed.read_stat.txt text/plain 21.9 MB
seq_bin_3 application/octet-stream 21.8 MB
seq_bin_1 application/octet-stream 26.8 MB
GMST_tmp.fnn application/octet-stream 37.6 MB
GeneMark_hmm.mod application/octet-stream 190.6 KB
seq_bin_2.mod application/octet-stream 63.4 KB
GMST_tmp application/octet-stream 7.1 MB
seq_bin_3.mod application/octet-stream 63.4 KB
seq_bin_1.mod application/octet-stream 63.4 KB
gms.log application/octet-stream 15.8 KB
GMST_tmp.faa text/plain 13.4 MB
seq_bin_2 application/octet-stream 23.2 MB
sj.rts.results.tsv text/tab-separated-values 448.9 KB
results_summary.json application/json 2.5 KB
Pipeline / Analysis Details
Analysis Run
Run
#96 — IsoSeq Annotation (Map + Collapse + SQANTI3)
Status
succeeded
Completed
2026-03-05 09:31:36
Pipeline
isoseq-annotation
Description
Auto-created from analysis run #96 (isoseq-annotation pipeline)
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Not Reviewed
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