Data Transformation: Functional Annotation (TransDecoder + Pfam + SwissProt) (Run #99)
Auto-created from analysis run #99 (isoseq-functional pipeline)
Status
Completed
✓
Files
0
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Team
0
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Used in Studies
1
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Assay Workflow:
PacBio IsoSeq sequencing of C57 mouse RNA (I-K1, Sequel I)
(sequencing assay → this data transformation)
Process Details
- Process ID
#191- Category
- Data_transformation
- Process Date
- March 6, 2026
- Created
- March 17, 2026 am 03:36
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Workflow Inputs
upstream:
IsoSeq Annotation (Map + Collapse + SQANTI3) #89
| Input | File | Description |
|---|---|---|
| Corrected transcripts | mouse_c57_i_k1_corrected.fasta |
SQANTI3-corrected isoform sequences |
| Classification | mouse_c57_i_k1_classification.txt |
SQANTI3 isoform classification |
Output Files
View Full Results
| File | Format | Size |
|---|---|---|
isoform_annotations.tsv |
text/tab-separated-values | 1.6 MB |
gene_functional_summary.tsv |
text/tab-separated-values | 331.5 KB |
mouse_c57_i_k1_corrected.fasta.transdecoder.gff3 |
text/plain | 4.2 MB |
mouse_c57_i_k1_corrected.fasta.transdecoder.cds |
text/plain | 11.7 MB |
blastp.tsv |
text/tab-separated-values | 1.2 MB |
mouse_c57_i_k1_corrected.fasta.transdecoder.bed |
text/plain | 884.2 KB |
mouse_c57_i_k1_corrected.fasta.transdecoder.pep |
text/plain | 4.4 MB |
rep_pfam.tsv |
text/tab-separated-values | 193.1 KB |
rep_besthit.tsv |
text/tab-separated-values | 1 MB |
pfam.domtblout |
application/octet-stream | 4.7 MB |
results_summary.json |
application/json | 2.4 KB |
Pipeline / Analysis Details
Analysis Run
- Run
- #99 — Functional Annotation (TransDecoder + Pfam + SwissProt)
- Status
- succeeded
- Completed
- 2026-03-06 10:29:40
- Pipeline
isoseq-functional
Description
Auto-created from analysis run #99 (isoseq-functional pipeline)
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