Data Transformation: Functional Annotation (TransDecoder + Pfam + SwissProt) (Run #106)
Auto-created from analysis run #106 (isoseq-functional pipeline)
Status
Completed
✓
Files
0
📎
Team
0
👥
Used in Studies
1
🔬
Assay Workflow:
PacBio IsoSeq sequencing of C57 mouse RNA (I-K1, Sequel I)
(sequencing assay → this data transformation)
Process Details
- Process ID
#198- Category
- Data_transformation
- Process Date
- March 7, 2026
- Created
- March 17, 2026 am 03:36
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Workflow Inputs
upstream:
IsoSeq Annotation (Map + Collapse + SQANTI3) #96
| Input | File | Description |
|---|---|---|
| Corrected transcripts | mouse_all_5_smrt_cells_combined_corrected.fasta |
SQANTI3-corrected isoform sequences |
| Classification | mouse_all_5_smrt_cells_combined_classification.txt |
SQANTI3 isoform classification |
Output Files
View Full Results
| File | Format | Size |
|---|---|---|
isoform_annotations.tsv |
text/tab-separated-values | 5.2 MB |
gene_functional_summary.tsv |
text/tab-separated-values | 659.8 KB |
mouse_all_5_smrt_cells_combined_corrected.fasta.transdecoder.bed |
text/plain | 2.9 MB |
mouse_all_5_smrt_cells_combined_corrected.fasta.transdecoder.pep |
text/plain | 14.7 MB |
mouse_all_5_smrt_cells_combined_corrected.fasta.transdecoder.cds |
text/plain | 39 MB |
blastp.tsv |
text/tab-separated-values | 3.9 MB |
mouse_all_5_smrt_cells_combined_corrected.fasta.transdecoder.gff3 |
text/plain | 14 MB |
rep_pfam.tsv |
text/tab-separated-values | 619.3 KB |
rep_besthit.tsv |
text/tab-separated-values | 3.3 MB |
pfam.domtblout |
application/octet-stream | 16.1 MB |
results_summary.json |
application/json | 320 KB |
Pipeline / Analysis Details
Analysis Run
- Run
- #106 — Functional Annotation (TransDecoder + Pfam + SwissProt)
- Status
- succeeded
- Completed
- 2026-03-07 07:37:21
- Pipeline
isoseq-functional
Description
Auto-created from analysis run #106 (isoseq-functional pipeline)
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