Data Transformation: ONT Long-Read Transcriptomics (IsoQuant) (Run #111)
Auto-created from FAILED analysis run #111 (cwl pipeline): No results found at /home/eldudy/cwl_run_20260317_063112_6cb8/results after 3 attempts
Status
failed
●
Files
0
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Team
0
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Used in Studies
1
🔬
Assay Workflow:
Nanopore PCR-cDNA sequencing of C57/DBA mouse RNA (run 3)
(sequencing assay → this data transformation)
Process Details
- Process ID
#235- Category
- Data_transformation
- Process Date
- March 17, 2026
- Created
- March 17, 2026 am 07:32
- Locked
- No
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Workflow Inputs
| Input | File | Description |
|---|---|---|
| Fastq | input.fastq.gz |
CWL input file |
| Reference | GRCm39.primary_assembly.genome.fa |
CWL input file |
| Annotation | gencode.vM35.annotation.gtf |
CWL input file |
Output Files
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Pipeline / Analysis Details
Analysis Run
- Run
- #111 — ONT Long-Read Transcriptomics (IsoQuant)
- Status
- failed
- Pipeline
cwl
Description
Auto-created from FAILED analysis run #111 (cwl pipeline): No results found at /home/eldudy/cwl_run_20260317_063112_6cb8/results after 3 attempts
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Approval Status
Not Reviewed
Activity History
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