Nanopore PCR-cDNA sequencing of C57/DBA mouse RNA (run 1)
GridION PCR-cDNA sequencing of C57BL/6 and DBA/2 mouse RNA. Barcodes 19-21 (C57, group a), 22-24 (DBA, group b).
Status
Completed
✓
Files
0
📎
Team
0
👥
Used in Studies
1
🔬
Process Details
- Process ID
#93- Category
- Sequencing
- Process Date
- April 21, 2023
- Created
- February 21, 2026 pm 14:43
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Linked Sequencing Runs 1
| Platform | Run | Samples | Linked | |
|---|---|---|---|---|
| Nanopore | Run #61 | 6 | 2026-02-21 17:40:01 | View |
Analysis Runs 3
Computational pipelines linked to this process
| Run | Pipeline | Status | Notes | Completed |
|---|---|---|---|---|
| #55 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | succeeded | DBA/2 combined (bc22+bc23+bc24) — GENCODE M35, complete_gene... | 2026-03-01 |
| #54 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | succeeded | C57BL/6 combined (bc19+bc20+bc21) — GENCODE M35, complete_ge... | 2026-03-01 |
| #3 | Transcript Discovery Mouse Long-Read RNA-Seq (ONT PCR-cDNA) | succeeded | 2026-02-23 |
Nanopore
Submitted Samples
6
| Sample | Origin Process | QC Link |
|---|---|---|
|
C57_rep1_bc19
C57BL/6 replicate 1, barcode 19 (group a)
|
PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24) | Run #61 |
|
C57_rep2_bc20
C57BL/6 replicate 2, barcode 20 (group a)
|
PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24) | Run #61 |
|
C57_rep3_bc21
C57BL/6 replicate 3, barcode 21 (group a)
|
PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24) | Run #61 |
|
DBA_rep1_bc22
DBA/2 replicate 1, barcode 22 (group b)
|
PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24) | Run #61 |
|
DBA_rep2_bc23
DBA/2 replicate 2, barcode 23 (group b)
|
PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24) | Run #61 |
|
DBA_rep3_bc24
DBA/2 replicate 3, barcode 24 (group b)
|
PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24) | Run #61 |
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