Nanopore PCR-cDNA sequencing of C57/DBA mouse RNA 1.5kb (run 2)
GridION PCR-cDNA sequencing of C57BL/6 and DBA/2 mouse RNA with 1.5kb size selection. Barcodes 19-21 (C57, group c), 22-24 (DBA, group d).
Status
Completed
✓
Files
0
📎
Team
0
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Used in Studies
1
🔬
Process Details
- Process ID
#94- Category
- Sequencing
- Process Date
- May 4, 2023
- Created
- February 21, 2026 pm 14:43
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Linked Sequencing Runs 1
| Platform | Run | Samples | Linked | |
|---|---|---|---|---|
| Nanopore | Run #62 | 6 | 2026-02-21 17:54:37 | View |
Analysis Runs 5
Computational pipelines linked to this process
| Run | Pipeline | Status | Notes | Completed |
|---|---|---|---|---|
| #55 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | succeeded | DBA/2 combined (bc22+bc23+bc24) — GENCODE M35, complete_gene... | 2026-03-01 |
| #54 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | succeeded | C57BL/6 combined (bc19+bc20+bc21) — GENCODE M35, complete_ge... | 2026-03-01 |
| #5 | Transcript Discovery Mouse Long-Read RNA-Seq (ONT PCR-cDNA) | succeeded | Try again! | 2026-02-23 |
| #2 | Transcript Discovery Mouse Long-Read RNA-Seq (ONT PCR-cDNA) | succeeded | Test HPC submission for mouse RNA-seq (1.5kb run) | 2026-02-23 |
| #1 | Transcript Discovery Mouse Long-Read RNA-Seq (ONT PCR-cDNA) | succeeded | C57BL/6 vs DBA/2 mouse cortex RNA — 6 samples (3 per strain)... | 2026-02-23 |
Nanopore
Submitted Samples
6
| Sample | Origin Process | QC Link |
|---|---|---|
|
C57_rep1_bc19_1.5kb
C57 rep1 bc19 library after 1.5 kb bead selection
|
AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries | Run #62 |
|
C57_rep2_bc20_1.5kb
C57 rep2 bc20 library after 1.5 kb bead selection
|
AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries | Run #62 |
|
C57_rep3_bc21_1.5kb
C57 rep3 bc21 library after 1.5 kb bead selection
|
AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries | Run #62 |
|
DBA_rep1_bc22_1.5kb
DBA rep1 bc22 library after 1.5 kb bead selection
|
AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries | Run #62 |
|
DBA_rep2_bc23_1.5kb
DBA rep2 bc23 library after 1.5 kb bead selection
|
AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries | Run #62 |
|
DBA_rep3_bc24_1.5kb
DBA rep3 bc24 library after 1.5 kb bead selection
|
AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries | Run #62 |
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