PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24)
PCR-cDNA barcoding library (SQK-PCS111) from 3 C57BL/6 and 3 DBA/2 mouse brain RNA biological replicates. 6 barcoded libraries pooled and sequenced across 3 GridION runs. Barcodes: C57 rep1-3 (bc19/20...
Status
Completed
✓
Files
0
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0
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Used in Studies
1
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Process Details
- Process ID
#97- Category
- Sample_prep
- Process Date
- March 13, 2023
- Created
- February 21, 2026 pm 17:40
- Locked
- Yes
Used in 1 research study:
- Strain-specific cortex gene expression and isoform usage (C57BL/6 and DBA/2 Mouse Cortex Transcriptomics)
Linked Sequencing Runs 1
| Platform | Run | Samples | Linked | |
|---|---|---|---|---|
| Nanopore | Run #61 | 6 | 2026-02-21 17:40:01 | View |
Created Samples 6
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C57_rep1_bc19
C57BL/6 replicate 1, barcode 19 (group a)
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C57_rep2_bc20
C57BL/6 replicate 2, barcode 20 (group a)
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C57_rep3_bc21
C57BL/6 replicate 3, barcode 21 (group a)
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DBA_rep1_bc22
DBA/2 replicate 1, barcode 22 (group b)
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DBA_rep2_bc23
DBA/2 replicate 2, barcode 23 (group b)
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DBA_rep3_bc24
DBA/2 replicate 3, barcode 24 (group b)
Source Samples 6
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1-R
Origin: Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
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2-R
Origin: Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
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3-R
Origin: Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
-
7-R
Origin: Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
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8-R
Origin: Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
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9-R
Origin: Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
C57_rep1_bc19
Sample #370Source Samples (Parents) 1
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1-R
via Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
Derived Samples (Children) 3
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C57_DBA_pool_run1
via Process #119 — Equimolar pooling of C57/DBA barcoded PCR-cDNA libraries (run 1)
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C57_rep1_bc10
via Process #121 — PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (run 3, bc10-15)
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C57_rep1_bc19_1.5kb
via Process #118 — AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries
All Ancestors 3
- └─ 1-R L1 via Process #111
- └─ 1-C57-CORTEX L2 via Process #115
- └─ C57-1 L3 via Process #113
All Descendants 5
- └─ C57_DBA_pool_run1 L1 via Process #119
- └─ C57_rep1_bc10 L1 via Process #121
- └─ C57_rep1_bc19_1.5kb L1 via Process #118
- └─ C57_DBA_pool_25fmol L2 via Process #116
- └─ C57_DBA_pool_run3 L2 via Process #122
C57_rep2_bc20
Sample #371Source Samples (Parents) 1
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2-R
via Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
Derived Samples (Children) 3
-
C57_DBA_pool_run1
via Process #119 — Equimolar pooling of C57/DBA barcoded PCR-cDNA libraries (run 1)
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C57_rep2_bc11
via Process #121 — PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (run 3, bc10-15)
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C57_rep2_bc20_1.5kb
via Process #118 — AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries
All Ancestors 3
- └─ 2-R L1 via Process #111
- └─ 2-C57-CORTEX L2 via Process #115
- └─ C57-2 L3 via Process #113
All Descendants 5
- └─ C57_DBA_pool_run1 L1 via Process #119
- └─ C57_rep2_bc11 L1 via Process #121
- └─ C57_rep2_bc20_1.5kb L1 via Process #118
- └─ C57_DBA_pool_25fmol L2 via Process #116
- └─ C57_DBA_pool_run3 L2 via Process #122
C57_rep3_bc21
Sample #372Source Samples (Parents) 1
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3-R
via Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
Derived Samples (Children) 3
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C57_DBA_pool_run1
via Process #119 — Equimolar pooling of C57/DBA barcoded PCR-cDNA libraries (run 1)
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C57_rep3_bc12
via Process #121 — PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (run 3, bc10-15)
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C57_rep3_bc21_1.5kb
via Process #118 — AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries
All Ancestors 3
- └─ 3-R L1 via Process #111
- └─ 3-C57-CORTEX L2 via Process #115
- └─ C57-3 L3 via Process #113
All Descendants 5
- └─ C57_DBA_pool_run1 L1 via Process #119
- └─ C57_rep3_bc12 L1 via Process #121
- └─ C57_rep3_bc21_1.5kb L1 via Process #118
- └─ C57_DBA_pool_25fmol L2 via Process #116
- └─ C57_DBA_pool_run3 L2 via Process #122
DBA_rep1_bc22
Sample #373Source Samples (Parents) 1
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7-R
via Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
Derived Samples (Children) 3
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C57_DBA_pool_run1
via Process #119 — Equimolar pooling of C57/DBA barcoded PCR-cDNA libraries (run 1)
-
DBA_rep1_bc13
via Process #121 — PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (run 3, bc10-15)
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DBA_rep1_bc22_1.5kb
via Process #118 — AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries
All Ancestors 3
- └─ 7-R L1 via Process #111
- └─ 1-DBA-CORTEX L2 via Process #115
- └─ DBA-1 L3 via Process #113
All Descendants 5
- └─ C57_DBA_pool_run1 L1 via Process #119
- └─ DBA_rep1_bc13 L1 via Process #121
- └─ DBA_rep1_bc22_1.5kb L1 via Process #118
- └─ C57_DBA_pool_25fmol L2 via Process #116
- └─ C57_DBA_pool_run3 L2 via Process #122
DBA_rep2_bc23
Sample #374Source Samples (Parents) 1
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8-R
via Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
Derived Samples (Children) 3
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C57_DBA_pool_run1
via Process #119 — Equimolar pooling of C57/DBA barcoded PCR-cDNA libraries (run 1)
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DBA_rep2_bc14
via Process #121 — PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (run 3, bc10-15)
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DBA_rep2_bc23_1.5kb
via Process #118 — AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries
All Ancestors 3
- └─ 8-R L1 via Process #111
- └─ 2-DBA-CORTEX L2 via Process #115
- └─ DBA-2 L3 via Process #113
All Descendants 5
- └─ C57_DBA_pool_run1 L1 via Process #119
- └─ DBA_rep2_bc14 L1 via Process #121
- └─ DBA_rep2_bc23_1.5kb L1 via Process #118
- └─ C57_DBA_pool_25fmol L2 via Process #116
- └─ C57_DBA_pool_run3 L2 via Process #122
DBA_rep3_bc24
Sample #375Source Samples (Parents) 1
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9-R
via Process #111 — Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
Derived Samples (Children) 3
-
C57_DBA_pool_run1
via Process #119 — Equimolar pooling of C57/DBA barcoded PCR-cDNA libraries (run 1)
-
DBA_rep3_bc15
via Process #121 — PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (run 3, bc10-15)
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DBA_rep3_bc24_1.5kb
via Process #118 — AMPure XP 1.5 kb size selection of C57/DBA PCR-cDNA libraries
All Ancestors 3
- └─ 9-R L1 via Process #111
- └─ 3-DBA-CORTEX L2 via Process #115
- └─ DBA-3 L3 via Process #113
All Descendants 5
- └─ C57_DBA_pool_run1 L1 via Process #119
- └─ DBA_rep3_bc15 L1 via Process #121
- └─ DBA_rep3_bc24_1.5kb L1 via Process #118
- └─ C57_DBA_pool_25fmol L2 via Process #116
- └─ C57_DBA_pool_run3 L2 via Process #122
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