Serial Dilution of DNA
A standardized method for preparing single and serial dilutions of DNA (e.g., 1:10, 1:100, 1:1000) for downstream assays such as PCR, qPCR, library prep, or spectro-/fluorometric quantification. A dilution reduces the concentration of a stock solution by mixing a measured volume of stock with a compatible diluent. The relationship is given by C₁V₁ = C₂V₂. A serial dilution repeats a constant factor (e.g., 1:10) across multiple steps to achieve large overall dilutions with improved accuracy.
sample_prepVersion History
Version 1 Current
Effective: 2025-08-11First version.
Procedure Steps (Version 1)
Safety
- Wear lab coat, gloves, and eye protection.
- Handle DNA with care to avoid contamination; keep samples on ice unless specified otherwise.
- Use DNase-free, low-bind plastics and tips with aerosol barriers.
- Dispose of waste according to institutional biosafety and chemical hygiene rules.
Materials and Reagents
- DNA stock solution (record ID, concentration, buffer).
- Diluent: Nuclease‑free water or low‑EDTA TE (choose based on downstream assay).
- Calibrated pipettes and sterile, aerosol‑resistant tips.
- Microcentrifuge tubes or 96‑well plate (DNase‑free, low-bind).
- Vortex mixer and brief‑spin microcentrifuge.
- Ice rack.
- Labels/marker and lab notebook or electronic record.
Definitions & Formulae
- 1:10 dilution = 1 part DNA + 9 parts diluent (final concentration = 0.1× stock).
- Serial 1:10 over n steps gives 1:10ⁿ overall (10⁻ⁿ × stock).
- C₁V₁ = C₂V₂ → V₁ = (C₂ × V_total)/C₁.
Preparation
- Thaw DNA on ice; briefly spin to collect contents.
- Verify or measure DNA concentration if needed (prefer fluorometric methods for accuracy at low ng/µL).
- Plan the dilution factor, number of steps, and final volumes. Use volumes ≥10× your pipette’s systematic error (e.g., prefer 100 µL over 10 µL when feasible).
Procedure A — Single 1:10 Dilution (example volumes shown)
- Label a DNase‑free tube with sample ID, “1:10”, date, and initials.
- Add diluent: 90 µL.
- Add DNA stock: 10 µL.
- Mix by pipetting up/down 10× or quick vortex (1 s); brief spin to collect.
- Record calculation, volumes, and resulting expected concentration (C₂ = 0.1 × C₁).
Alternatives (same 1:10 ratio):
- 20 µL DNA + 180 µL diluent (200 µL total)
- 5 µL DNA + 45 µL diluent (50 µL total; accuracy depends on pipette)
Procedure B — Serial 1:10 Dilution Series (tube‑to‑tube)
- Plan & label tubes as: 10⁻¹, 10⁻², 10⁻³, … (or 1:10, 1:100, 1:1000). Include sample ID and date.
- Pre‑aliquot diluent into each tube (e.g., 90 µL per tube for 100 µL steps).
- Step 1 (10⁻¹): Add 10 µL of DNA stock to tube 10⁻¹. Mix thoroughly; brief spin.
- Step 2 (10⁻²): Using a fresh tip, transfer 10 µL from tube 10⁻¹ to tube 10⁻². Mix; brief spin.
Overall factors:
- Tube 10⁻¹ = 0.1× stock; 10⁻² = 0.01×; 10⁻³ = 0.001×, etc.
- Repeat stepwise through the final tube, changing tips each transfer.
- Optional blank: Include a diluent‑only tube/well to monitor contamination.
- Record all volumes and any deviations.
Procedure C — Serial 1:10 in a 96‑well Plate (for qPCR or assays)
- Map wells (e.g., A1 = stock input, A2 = 10⁻¹, A3 = 10⁻², …).
- Dispense diluent into target wells (e.g., 90 µL each).
- Add stock to the first dilution well (A2): transfer 10 µL from stock (A1) → A2; mix by pipetting 10×.
- Serial transfer: Move 10 µL from A2 → A3, mix; continue across row/column as planned.
- Change tips every transfer and avoid touching well walls above liquid to reduce carryover.
- Seal plate as required; briefly spin if compatible.
Examples & Calculations
-
Example 1 (single 1:10): You need 100 µL at 1:10 from a 58 ng/µL stock.
- V₁ = (C₂ × V_total)/C₁ = ((5.8 ng/µL) × 100 µL) / (58 ng/µL) = 10 µL stock; add 90 µL diluent.
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Example 2 (targeting 2 ng/µL from 58 ng/µL):
- Overall factor = 2/58 ≈ 1/29. Create 1:10 (5.8 ng/µL) then 1:3 (≈1.93 ng/µL).
- Step 1: 1:10 as above. Step 2 (from 5.8 ng/µL): V₁ = (2 ng/µL × 150 µL)/5.8 ng/µL ≈ 51.7 µL; add 98.3 µL diluent.
Quality Control & Acceptance Criteria
- Mixing: Each dilution should be homogeneous (vortex/pipette adequately).
- Replicates: Optional duplicates should agree within ±10–20% (context‑dependent).
- Contamination check: No detectable DNA signal in diluent blank for sensitive assays.
- Traceability: Record stock ID, initial concentration, diluent type, tube/plate map, operator, date/time.
Tips for Accuracy
- Use the largest practical volumes to minimize relative error.
- Keep DNA on ice; avoid repeated freeze–thaw.
- Pre‑wet tips and dispense below the meniscus, touching off to the tube wall.
- Change tips at every step; never pipette back into the source (avoid back‑contamination).
- For very low concentrations, prefer fluorometric quantification to confirm outcomes.
Waste Disposal
- Tips, tubes, and plates: dispose in appropriate laboratory waste per local policy.
- Liquids: collect and discard according to institutional chemical/biological waste procedures.