Functional Annotation (TransDecoder + Pfam + SwissProt)
Functional: C57 combined (I-K1 + K1-50pM)
Type
Custom
Status
succeeded
Engine
custom
Duration
1.2 h
Source Data
Pipeline
PacBio CCS (Subreads → HiFi)
IsoSeq Clustering (Refine + Cluster)
IsoSeq Annotation (Map + Collapse + SQANTI3)
Functional Annotation (TransDecoder + Pfam + SwissProt)
Run #104
(this run)
succeeded
1 sources
Combined From
Software Tools
| Tool | Version | URL |
|---|---|---|
| TransDecoder | - | https://github.com/TransDecoder/TransDecoder |
| HMMER (hmmscan) | - | http://hmmer.org/ |
| diamond | - | https://github.com/bbuchfink/diamond |
| Singularity | - | https://sylabs.io/singularity/ |
Results Summary
Transcripts
14,069
Pfam Coverage
84.2%
SwissProt Coverage
89.7%
Domain Variant Genes
377
Peptide Length Distribution
13,118 ORFs | Median: 426 aa | Mean: 500 aa | Max: 2,758 aa
Evidence Tier Distribution
Frame Impact Classification
Top Pfam Domains
ORF Type Distribution
Output Files
Provenance
| Execution | IsoSeq Functional Annotation: TransDecoder + Pfam + SwissProt (mouse_c57_combined) |
| Started | 2026-03-06T09:42:49+00:00 |
| Completed | 2026-03-06T00:55:03+00:00 |
RO-Crate 1.1
Workflow RO-Crate 1.0
FAIR
This analysis is packaged as a Research Object Crate
with machine-readable provenance and FAIR metadata.
RO-Crate Metadata (JSON-LD)
Show/hide raw JSON-LD
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