PacBio CCS (Subreads → HiFi)
CCS: C57 I-K1 (retry with pbindex)
Type
Custom
Status
succeeded
Engine
ccs 6.4.0
Duration
0.8 h
Source Data
Pipeline
PacBio CCS (Subreads → HiFi)
Run #74
(this run)
succeeded
IsoSeq Clustering (Refine + Cluster)
IsoSeq Annotation (Map + Collapse + SQANTI3)
Functional Annotation (TransDecoder + Pfam + SwissProt)
Software Tools
| Tool | Version | URL |
|---|---|---|
| ccs | 6.4.0 | https://github.com/PacificBiosciences/ccs |
| pbindex | - | https://github.com/PacificBiosciences/pbbam |
Results Summary
CCS Reads
133,585
Mean Length
2,563 bp
Mean Passes
0.0
Conversion
31.8%
Output Files
Provenance
| Execution | PacBio CCS: subreads to HiFi (mouse_c57_IK1) |
| Started | 2026-03-04T16:36:10+00:00 |
| Completed | 2026-03-04T07:22:37+00:00 |
RO-Crate 1.1
Workflow RO-Crate 1.0
FAIR
This analysis is packaged as a Research Object Crate
with machine-readable provenance and FAIR metadata.
RO-Crate Metadata (JSON-LD)
Show/hide raw JSON-LD
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"datePublished": "2026-03-04",
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