ccs.bam HPC 373.5 MB ccs.bam.pbi HPC 1.4 MB ccs.ccs_report.txt HPC 890 B ccs.report.json HPC 3.4 KB ccs.zmw_metrics.json.gz HPC 19.2 MB results_summary.json HPC 164 B

Provenance

Execution	PacBio CCS: subreads to HiFi (mouse_c57_K1_50pM)
Started	2026-03-04T16:36:32+00:00
Completed	2026-03-04T07:21:20+00:00

RO-Crate 1.1 Workflow RO-Crate 1.0 FAIR

This analysis is packaged as a Research Object Crate with machine-readable provenance and FAIR metadata.

RO-Crate Metadata (JSON-LD)

Show/hide raw JSON-LD

{
    "@context": "https://w3id.org/ro/crate/1.1/context",
    "@graph": [
        {
            "@id": "ro-crate-metadata.json",
            "@type": "CreativeWork",
            "about": {
                "@id": "./"
            },
            "conformsTo": [
                {
                    "@id": "https://w3id.org/ro/crate/1.1"
                },
                {
                    "@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0"
                }
            ]
        },
        {
            "@id": "./",
            "@type": "Dataset",
            "name": "PacBio CCS (mouse_c57_K1_50pM) \u2014 Run #76",
            "description": "PacBio CCS: subreads to HiFi consensus reads",
            "datePublished": "2026-03-04",
            "license": {
                "@id": "https://creativecommons.org/licenses/by/4.0/"
            },
            "hasPart": [
                {
                    "@id": "ccs.bam.pbi"
                },
                {
                    "@id": "ccs.zmw_metrics.json.gz"
                },
                {
                    "@id": "ccs.bam"
                },
                {
                    "@id": "ccs.ccs_report.txt"
                },
                {
                    "@id": "ccs.report.json"
                },
                {
                    "@id": "results_summary.json"
                }
            ],
            "mentions": [
                {
                    "@id": "#execution"
                }
            ]
        },
        {
            "@id": "#ccs",
            "@type": "SoftwareApplication",
            "name": "ccs",
            "softwareVersion": "6.4.0",
            "url": {
                "@id": "https://github.com/PacificBiosciences/ccs"
            }
        },
        {
            "@id": "#pbindex",
            "@type": "SoftwareApplication",
            "name": "pbindex",
            "url": {
                "@id": "https://github.com/PacificBiosciences/pbbam"
            }
        },
        {
            "@id": "ccs.bam.pbi",
            "@type": "File",
            "name": "ccs.bam.pbi",
            "encodingFormat": "application/octet-stream",
            "contentSize": "1.4 MB",
            "sha256": "cad7192f31c8e9580698a14e5b9a170f44d53ba2ede51336b8115b9e3c6fda89"
        },
        {
            "@id": "ccs.zmw_metrics.json.gz",
            "@type": "File",
            "name": "ccs.zmw_metrics.json.gz",
            "encodingFormat": "application/octet-stream",
            "contentSize": "19.2 MB",
            "sha256": "b4a1e1a45d273ae8ee52cb351698b1849623c8c892aaa0b907d5b40f013ba31b"
        },
        {
            "@id": "ccs.bam",
            "@type": "File",
            "name": "ccs.bam",
            "encodingFormat": "application/octet-stream",
            "contentSize": "373.5 MB",
            "sha256": "b79e763c1e5ecba0856514087ebb8d95cd305fb7303297cf422fa2a3e7a48a16"
        },
        {
            "@id": "ccs.ccs_report.txt",
            "@type": "File",
            "name": "ccs.ccs_report.txt",
            "encodingFormat": "application/octet-stream",
            "contentSize": "890 B",
            "sha256": "14bae6c256599f244144656a192fd3edf6bd3f6e398252a1e2fc85731ca88b25"
        },
        {
            "@id": "ccs.report.json",
            "@type": "File",
            "name": "ccs.report.json",
            "encodingFormat": "application/json",
            "contentSize": "3.4 KB",
            "sha256": "c3797cceaec80a4ede3347d36e7711c13e191e72817bf6e3e4b0f86a5add1d15"
        },
        {
            "@id": "#execution",
            "@type": "CreateAction",
            "name": "PacBio CCS: subreads to HiFi (mouse_c57_K1_50pM)",
            "instrument": {
                "@id": "#ccs"
            },
            "startTime": "2026-03-04T16:36:32+00:00",
            "endTime": "2026-03-04T07:21:20+00:00",
            "result": [
                {
                    "@id": "ccs.bam.pbi"
                },
                {
                    "@id": "ccs.zmw_metrics.json.gz"
                },
                {
                    "@id": "ccs.bam"
                },
                {
                    "@id": "ccs.ccs_report.txt"
                },
                {
                    "@id": "ccs.report.json"
                }
            ]
        },
        {
            "@id": "results_summary.json",
            "@type": "File",
            "name": "results_summary.json",
            "description": "CCS conversion summary statistics",
            "encodingFormat": "application/json",
            "contentSize": "164 B",
            "sha256": "5c76f30942458a674de702bfccfcc8842279c3c1158dfbc9728827f7bfc99d71"
        }
    ]
}