PacBio CCS (Subreads → HiFi)
CCS: DBA K7-50pM (retry with pbindex) Worker error: PBS submission failed
Type
Custom
Status
succeeded
Engine
ccs 6.4.0
Duration
0.9 h
Source Data
Pipeline
PacBio CCS (Subreads → HiFi)
Run #77
(this run)
succeeded
IsoSeq Clustering (Refine + Cluster)
IsoSeq Annotation (Map + Collapse + SQANTI3)
Functional Annotation (TransDecoder + Pfam + SwissProt)
Software Tools
| Tool | Version | URL |
|---|---|---|
| ccs | 6.4.0 | https://github.com/PacificBiosciences/ccs |
| pbindex | - | https://github.com/PacificBiosciences/pbbam |
Results Summary
CCS Reads
187,395
Mean Length
2,607 bp
Mean Passes
0.0
Conversion
36.2%
Output Files
Provenance
| Execution | PacBio CCS: subreads to HiFi (mouse_dba_K7_50pM) |
| Started | 2026-03-04T16:37:41+00:00 |
| Completed | 2026-03-04T07:32:41+00:00 |
RO-Crate 1.1
Workflow RO-Crate 1.0
FAIR
This analysis is packaged as a Research Object Crate
with machine-readable provenance and FAIR metadata.
RO-Crate Metadata (JSON-LD)
Show/hide raw JSON-LD
{
"@context": "https://w3id.org/ro/crate/1.1/context",
"@graph": [
{
"@id": "ro-crate-metadata.json",
"@type": "CreativeWork",
"about": {
"@id": "./"
},
"conformsTo": [
{
"@id": "https://w3id.org/ro/crate/1.1"
},
{
"@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0"
}
]
},
{
"@id": "./",
"@type": "Dataset",
"name": "PacBio CCS (mouse_dba_K7_50pM) \u2014 Run #77",
"description": "PacBio CCS: subreads to HiFi consensus reads",
"datePublished": "2026-03-04",
"license": {
"@id": "https://creativecommons.org/licenses/by/4.0/"
},
"hasPart": [
{
"@id": "ccs.bam.pbi"
},
{
"@id": "ccs.zmw_metrics.json.gz"
},
{
"@id": "ccs.bam"
},
{
"@id": "ccs.ccs_report.txt"
},
{
"@id": "ccs.report.json"
},
{
"@id": "results_summary.json"
}
],
"mentions": [
{
"@id": "#execution"
}
]
},
{
"@id": "#ccs",
"@type": "SoftwareApplication",
"name": "ccs",
"softwareVersion": "6.4.0",
"url": {
"@id": "https://github.com/PacificBiosciences/ccs"
}
},
{
"@id": "#pbindex",
"@type": "SoftwareApplication",
"name": "pbindex",
"url": {
"@id": "https://github.com/PacificBiosciences/pbbam"
}
},
{
"@id": "ccs.bam.pbi",
"@type": "File",
"name": "ccs.bam.pbi",
"encodingFormat": "application/octet-stream",
"contentSize": "1.7 MB",
"sha256": "84f378129b378d88f789d9edcb7fc01379889dcc0ad0e03e7191e83f495c16e9"
},
{
"@id": "ccs.zmw_metrics.json.gz",
"@type": "File",
"name": "ccs.zmw_metrics.json.gz",
"encodingFormat": "application/octet-stream",
"contentSize": "19.7 MB",
"sha256": "e23f7d968755a3e57f6b9248a39b36dcec92ddc69f69dd94c88a96ebd856b6ce"
},
{
"@id": "ccs.bam",
"@type": "File",
"name": "ccs.bam",
"encodingFormat": "application/octet-stream",
"contentSize": "429.8 MB",
"sha256": "88cfdaf9a78cb40cfd7f6156b8d4a3dc5b12a8f734a1570efd284a47e7704a38"
},
{
"@id": "ccs.ccs_report.txt",
"@type": "File",
"name": "ccs.ccs_report.txt",
"encodingFormat": "application/octet-stream",
"contentSize": "890 B",
"sha256": "55f7d78c13ee31a0d0096f890d008fa5c43bfb3557a43566c46b0690af54f962"
},
{
"@id": "ccs.report.json",
"@type": "File",
"name": "ccs.report.json",
"encodingFormat": "application/json",
"contentSize": "3.4 KB",
"sha256": "c6c423e90be4c6b317f612cd03d329b872f87832ae58cb61f8188b8e0e16df24"
},
{
"@id": "#execution",
"@type": "CreateAction",
"name": "PacBio CCS: subreads to HiFi (mouse_dba_K7_50pM)",
"instrument": {
"@id": "#ccs"
},
"startTime": "2026-03-04T16:37:41+00:00",
"endTime": "2026-03-04T07:32:41+00:00",
"result": [
{
"@id": "ccs.bam.pbi"
},
{
"@id": "ccs.zmw_metrics.json.gz"
},
{
"@id": "ccs.bam"
},
{
"@id": "ccs.ccs_report.txt"
},
{
"@id": "ccs.report.json"
}
]
},
{
"@id": "results_summary.json",
"@type": "File",
"name": "results_summary.json",
"description": "CCS conversion summary statistics",
"encodingFormat": "application/json",
"contentSize": "164 B",
"sha256": "5c76f30942458a674de702bfccfcc8842279c3c1158dfbc9728827f7bfc99d71"
}
]
}