Libre Biotech

PacBio CCS (Subreads → HiFi)

CCS: DBA K7 (retry with pbindex)

Type
Custom
Status
succeeded
Engine
ccs 6.4.0
Duration
1.4 h
Pipeline
PacBio CCS (Subreads → HiFi)
Run #78 (this run)
succeeded

Software Tools

Results Summary

CCS Reads
218,259
Mean Length
2,104 bp
Mean Passes
0.0
Conversion
68.6%

Output Files

ccs.bam HPC 332 MB ccs.bam.pbi HPC 1.9 MB ccs.ccs_report.txt HPC 888 B ccs.report.json HPC 3.4 KB ccs.zmw_metrics.json.gz HPC 15 MB results_summary.json HPC 164 B

Provenance

Execution PacBio CCS: subreads to HiFi (mouse_dba_K7)
Started 2026-03-04T16:37:48+00:00
Completed 2026-03-04T07:58:31+00:00
RO-Crate 1.1 Workflow RO-Crate 1.0 FAIR
This analysis is packaged as a Research Object Crate with machine-readable provenance and FAIR metadata.

RO-Crate Metadata (JSON-LD)

Show/hide raw JSON-LD
{
    "@context": "https://w3id.org/ro/crate/1.1/context",
    "@graph": [
        {
            "@id": "ro-crate-metadata.json",
            "@type": "CreativeWork",
            "about": {
                "@id": "./"
            },
            "conformsTo": [
                {
                    "@id": "https://w3id.org/ro/crate/1.1"
                },
                {
                    "@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0"
                }
            ]
        },
        {
            "@id": "./",
            "@type": "Dataset",
            "name": "PacBio CCS (mouse_dba_K7) \u2014 Run #78",
            "description": "PacBio CCS: subreads to HiFi consensus reads",
            "datePublished": "2026-03-04",
            "license": {
                "@id": "https://creativecommons.org/licenses/by/4.0/"
            },
            "hasPart": [
                {
                    "@id": "ccs.bam.pbi"
                },
                {
                    "@id": "ccs.zmw_metrics.json.gz"
                },
                {
                    "@id": "ccs.bam"
                },
                {
                    "@id": "ccs.ccs_report.txt"
                },
                {
                    "@id": "ccs.report.json"
                },
                {
                    "@id": "results_summary.json"
                }
            ],
            "mentions": [
                {
                    "@id": "#execution"
                }
            ]
        },
        {
            "@id": "#ccs",
            "@type": "SoftwareApplication",
            "name": "ccs",
            "softwareVersion": "6.4.0",
            "url": {
                "@id": "https://github.com/PacificBiosciences/ccs"
            }
        },
        {
            "@id": "#pbindex",
            "@type": "SoftwareApplication",
            "name": "pbindex",
            "url": {
                "@id": "https://github.com/PacificBiosciences/pbbam"
            }
        },
        {
            "@id": "ccs.bam.pbi",
            "@type": "File",
            "name": "ccs.bam.pbi",
            "encodingFormat": "application/octet-stream",
            "contentSize": "1.9 MB",
            "sha256": "b802e0508af75240b04ab4597d80d7b307ecf578ea39e127c2e1c38257430a23"
        },
        {
            "@id": "ccs.zmw_metrics.json.gz",
            "@type": "File",
            "name": "ccs.zmw_metrics.json.gz",
            "encodingFormat": "application/octet-stream",
            "contentSize": "15 MB",
            "sha256": "56e9b2b7ef79d976bfc4072e6b8407f166ec975e56f688892bb2c1aa961cfd48"
        },
        {
            "@id": "ccs.bam",
            "@type": "File",
            "name": "ccs.bam",
            "encodingFormat": "application/octet-stream",
            "contentSize": "332 MB",
            "sha256": "d70d03022208d5c365695d2bc4c1a416e73de365292a3225686dfab0db67679b"
        },
        {
            "@id": "ccs.ccs_report.txt",
            "@type": "File",
            "name": "ccs.ccs_report.txt",
            "encodingFormat": "application/octet-stream",
            "contentSize": "888 B",
            "sha256": "6c848b7c3fd9560bbe4e61d875332e7a3b0ea4174103af7289576c9fddf73fd3"
        },
        {
            "@id": "ccs.report.json",
            "@type": "File",
            "name": "ccs.report.json",
            "encodingFormat": "application/json",
            "contentSize": "3.4 KB",
            "sha256": "50ed1ab05143fb5f70aaf9ab2df09da81a0c185d14c98bf9bf10752f8fe7761f"
        },
        {
            "@id": "#execution",
            "@type": "CreateAction",
            "name": "PacBio CCS: subreads to HiFi (mouse_dba_K7)",
            "instrument": {
                "@id": "#ccs"
            },
            "startTime": "2026-03-04T16:37:48+00:00",
            "endTime": "2026-03-04T07:58:31+00:00",
            "result": [
                {
                    "@id": "ccs.bam.pbi"
                },
                {
                    "@id": "ccs.zmw_metrics.json.gz"
                },
                {
                    "@id": "ccs.bam"
                },
                {
                    "@id": "ccs.ccs_report.txt"
                },
                {
                    "@id": "ccs.report.json"
                }
            ]
        },
        {
            "@id": "results_summary.json",
            "@type": "File",
            "name": "results_summary.json",
            "description": "CCS conversion summary statistics",
            "encodingFormat": "application/json",
            "contentSize": "164 B",
            "sha256": "5c76f30942458a674de702bfccfcc8842279c3c1158dfbc9728827f7bfc99d71"
        }
    ]
}