IsoSeq Clustering (Refine + Cluster)
Clustering: All 5 SMRT cells combined
Type
CWL
Status
succeeded
Engine
cwltool
Duration
0.4 h
Source Data
Pipeline
PacBio CCS (Subreads → HiFi)
IsoSeq Clustering (Refine + Cluster)
Run #86
(this run)
succeeded
5 sources
IsoSeq Annotation (Map + Collapse + SQANTI3)
Functional Annotation (TransDecoder + Pfam + SwissProt)
Combined From
- #74 — PacBio CCS (Subreads → HiFi) succeeded
- #75 — PacBio CCS (Subreads → HiFi) succeeded
- #76 — PacBio CCS (Subreads → HiFi) succeeded
- #77 — PacBio CCS (Subreads → HiFi) succeeded
- #78 — PacBio CCS (Subreads → HiFi) succeeded
Workflow
IsoSeq Clustering (Refine + Cluster)
#cwl
Software Tools
| Tool | Version | URL |
|---|---|---|
| cwltool | - | https://github.com/common-workflow-language/cwltool |
Results Summary
Input CCS Reads
715,575
FLNC Reads
699,084
Mean FLNC Length
0 nt
HQ Isoforms
0
LQ Isoforms
0
Clustering Ratio
0.0
FLNC / HQ isoforms
Mean FL Support
9.4
reads per isoform
Total FL Reads
551,434
Output Files
Provenance
| Execution | Expression quantification summary |
| Completed | 2026-03-04T13:21:19+00:00 |
RO-Crate 1.1
Workflow RO-Crate 1.0
FAIR
This analysis is packaged as a Research Object Crate
with machine-readable provenance and FAIR metadata.
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Show/hide raw JSON-LD
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