C57BL/6 and DBA/2 Mouse Cortex Transcriptomics

Mouse transcriptomics · Active · Created 2026-02-23

Comparative long-read transcriptomics of cortex tissue from C57BL/6J and DBA/2J inbred mouse strains using Oxford Nanopore PCR-cDNA sequencing. Investigates strain-specific differences in gene expression and isoform usage in brain cortex.

Studies

Strain-specific cortex gene expression and isoform usage

Differential gene expression and transcript isoform analysis between C57BL/6J and DBA/2J mouse cortex tissue using Oxford Nanopore PCR-cDNA long-re...

Publications

No publications yet.

Active Pipelines 2 failed

#111	ONT Long-Read Transcriptomics (IsoQuant)	Strain-specific cortex gene expression and isoform usage	failed
#41	ONT Long-Read Transcriptomics (IsoQuant)	Strain-specific cortex gene expression and isoform usage	failed

Details

Visibility: Public
License: CC-BY-4.0
Group: Mouse transcriptomics

Statistics

Studies

Processes

Samples

Publications

FAIR Score 60% — Fair

F — Findable 40%

A — Accessible 75%

I — Interoperable 70%

R — Reusable 55%

7 suggestions to improve

FAdd a DOI for persistent identification
FAdd investigation contacts with ORCID
FLink related publications
ASet a submission date
ASet a public release date for planned access
...and 2 more

AI-Ready Score 78% — Good

Machine-Readable Formats 12/12

Structured Metadata 12/12

Data Provenance 12/12

Standard File Formats 0/12

Reproducibility 13/13

Quantitative Measurements 13/13

Consistent Labeling 3/12

API Accessibility 13/13

2 suggestions to improve

FilesAttach standard format files (FASTQ, BAM, CSV, GFF3, VCF, BED) to processes
LabelingUse a consistent naming pattern for sample labels (e.g. PREFIX-001, PREFIX-002)

Comments

Comments 0

No comments yet.