Libre Biotech
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OpenTaq Cellular Reagent Production (Evaporative Drying)

Produces a functional Taq DNA polymerase reagent without chromatographic purification, following the cellular-reagents approach of Bhadra et al. (2021, PLoS ONE, CC-BY 4.0). Overexpressing E. coli cells are harvested, aliquoted, and evaporated to dryness in a desiccant jar; the dried cells release active enzyme on rehydration in PCR master mix, eliminating cold-chain dependency. Suitable for PC1 community-lab facilities without access to a lyophiliser. Not a clinical or regulatory-grade reagent.

sample_prep https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0252507
Procedure Details
Safety & Hazards
  • PC1 (OGTR) / CL1 (HSE) containment required. This procedure produces and manipulates a genetically modified organism (E. coli BL21(DE3) carrying the pATetO-Taq expression plasmid) and cannot legally be performed in a non-certified facility. Australian operators: OGTR-certified PC1 facility. UK operators: HSE-notified CL1 premises under GMO (Contained Use) Regulations 2014.
  • BL21(DE3) safety profile. BSL-1 host; non-pathogenic; standard lab-safety precautions apply. Autoclave all liquid and solid waste before disposal.
  • Ampicillin. Handle with gloves; avoid skin contact. Waste containing ampicillin should be autoclaved and disposed of per local biosafety waste protocols.
  • Anhydrotetracycline (aTC). Chemical inducer; low acute toxicity but handle with standard gloves/eye protection. Dispose per chemical-waste pathway, not down the drain.
  • Desiccant (calcium sulfate). Mild skin/eye irritant in dust form. Handle in a ventilated area; avoid inhalation. Consult SDS.
  • Heat inactivation prior to end-user distribution. After evaporative drying, heat-treat the sealed aliquots at 60°C for 10 minutes to inactivate any residual viable cells. This is required before any release of the reagent outside the producing facility, even in RUO contexts, because the enzyme is functional after heat treatment but the GMO host is not viable.
  • No clinical application. This reagent is for research and educational use only (RUO). Not validated or approved for clinical diagnostic, therapeutic, or regulatory-grade use.
Preparation Notes

Plasmid + strain. Obtain pATetO-Taq from Addgene (search the Open Enzyme Collection) under OpenMTA terms. Obtain E. coli BL21(DE3) competent cells from NEB, Novagen, or prepare in-house by the standard calcium-chloride or TSS method. Transform and store single-colony glycerol stocks at −80°C before beginning the production run.

Media prep. Superior Broth (Athena Enzyme Systems product; in-house substitute: 32 g/L tryptone, 20 g/L yeast extract, 5 g/L NaCl, autoclaved). Ampicillin stock at 100 mg/mL in water, filter-sterilised, stored at −20°C. Anhydrotetracycline (aTC) stock at 1 mg/mL in 50% ethanol, stored at −20°C protected from light.

Desiccant preparation. Calcium sulfate pellets (or silica gel as substitute); if previously used, regenerate by baking at 200°C for 2 hours and cool in sealed container before reuse.

Bench prep. Dedicated pre-transformation and post-transformation areas. Autoclave flasks, tips, and waste. Keep glove changes strict between handling live culture and dried-reagent aliquots (once aliquots are sealed, treat them as finished product, not live culture).

LibreBiotech setup. Before starting production: create a Process in your production Study referencing this procedure version. Each production batch should be a discrete Process with its own Sample records (one Sample per aliquot strip), linked to the same parent Process. Lot number format recommended: OT-YYYYMMDD-NN (OpenTaq / date / batch-of-day).

Timing
  • Day 0 (30 min active, then overnight): Plate transformation → 37°C overnight growth.
  • Day 1 (15 min active, then overnight): Pick colony into starter culture → 37°C 225 rpm overnight.
  • Day 2 (~5 h active): Dilute 1:200 → grow to OD600 0.4–0.7 (~2 h) → induce with aTC (3 h at 37°C) → harvest, wash, aliquot (~30 min).
  • Day 2 → Day 3/4 (hands-off): Evaporation at 37°C in desiccant jars, 1–2 days until visibly dry.
  • Day 4 (~15 min active): Seal caps, heat-inactivate (60°C × 10 min), label, QC-activity test (small subset), store.
  • Total active time per batch: ~6 hours spread across 4 days. Hands-off time dominates.
  • Time-sensitive: Do not leave induced cultures at room temperature; proceed from harvest to aliquot within 30 minutes. Do not interrupt the evaporation step once started — reopening the jar mid-drying risks rehydration from ambient humidity.
Equipment (Catalog) 8
  • Microcentrifuge Centrifugation
    Specs: ≥9,000 × g, 1.5 mL and 50 mL adapters
    For harvest + wash steps
  • Micropipette Liquid handling
    Specs: P10, P200, P1000; filter tips only
    Calibrated annually
  • Spectrophotometer Measurement
    Specs: OD600 at 1 mL or cuvette volume
    For harvest-timing decisions
  • Vortex mixer Mixing
    Specs: Standard benchtop
  • Biosafety cabinet Safety
    Specs: Class II Type A2 or equivalent; PC1 certified
    Required for OGTR / HSE compliance
  • Desiccator jar Storage
    Specs: ~118 mL sealed plastic or glass jar
    Reusable; clean between batches
  • Benchtop incubator Thermal regulation
    Specs: 37°C static (no shaking), ≥5 L chamber
    Evaporation phase (1–2 days); separate from culture incubator
  • Shaking incubator Thermal regulation
    Specs: 37°C capable, 225 rpm, 250 mL flask positions
    Primary growth + induction equipment
Materials (Catalog) 8
  • E. coli BL21(DE3) (NEB) C2527I Bacterial strain
    Qty: 1 transformant
    NEB C2527I or in-house prepared competent cells
  • pATetO-Taq (Addgene) Expression plasmid
    Qty: 1 ng
    Addgene; Open Enzyme Collection; OpenMTA licensed. pOpen_taq (Addgene #153315) is an equivalent alternative.
  • Ampicillin Antibiotic
    Qty: 100 µg/mL final
    Sigma A9518 or equivalent; sterile-filtered stock at 100 mg/mL
  • Anhydrotetracycline Inducer
    Qty: 20 ng/mL final
    Light-sensitive; store stock at −20°C in amber tube
  • Drierite 8 mesh (W. A. Hammond Drierite) Desiccant
    Qty: 60 mL per jar
    Calcium sulfate pellets; regenerable at 200°C for 2h
  • 0.2 mL 8-tube PCR strip PCR tube strip
    Qty: 2-3 strips per jar
    Standard 8-tube strips with individual caps
  • Buffer Reagent
    Qty: 2 mL
    For wash + final resuspension
  • Superior Broth (Athena Enzyme Systems) 0105 Growth media
    Qty: 50 mL
    Athena ASI-4000; in-house substitute: 32/20/5 g/L tryptone/yeast/NaCl
Protocol Parameters Captured per-assay on each run; exported as ISA-Tab Parameter Value columns
Name Type Required Default Unit Description
atc_induction_conc_ng_ml number 20 Anhydrotetracycline concentration for protein induction. Default 20 ng/mL per reference paper. Higher concentrations increase expression but risk metabolic burden.
atc_induction_time_h number 3 hour (UO:0000032) Duration of aTC-mediated expression at 37°C, 225 rpm. Default 3 h. Extending to 4-5 h may increase yield but risks inclusion-body formation.
atc_induction_temp_c number 37 degree Celsius (UO:0000027) Temperature during induction. Default 37°C. Lower (30°C) may reduce inclusion bodies for problematic proteins; Taq is robust at 37°C.
evaporation_temp_c number 37 degree Celsius (UO:0000027) Static incubator temperature during the drying phase. Default 37°C. Higher temperatures accelerate drying but risk enzyme denaturation.
evaporation_time_days number 2 day (UO:0000033) Duration of evaporative drying. 1-2 days is typical; longer may be needed in high-humidity conditions. Check visually before sealing.
harvest_od600 number 0.55 OD600 at which to induce expression. Paper specifies 0.4–0.7 range; default 0.55 is midpoint. Consistency improves batch-to-batch reproducibility.
final_suspension_od600 number 6.5 OD600 of the concentrated cell suspension immediately before aliquotting. Paper specifies 6.0–7.0; default 6.5 is midpoint.
cells_per_aliquot number 20000000 Approximate cell count per single-use aliquot. Default 2 × 10⁷ (20 million) cells, which equates to ~1 standard 25 µL PCR reaction's worth.
heat_inactivation_temp_c number 60 degree Celsius (UO:0000027) Temperature for post-drying heat inactivation of GMO host. Default 60°C for 10 min; inactivates host while preserving Taq activity (Taq is stable to >95°C).
storage_temp_c number 22 degree Celsius (UO:0000027) Storage temperature for sealed dried aliquots. Default room temperature (20–25°C); refrigerated (4°C) storage extends shelf life further.
Procedure Steps (Version 0.1.0)

Transform BL21(DE3) competent cells with 1 ng pATetO-Taq plasmid DNA by standard heat-shock (42°C × 45 s) or electroporation.

Plate on LB agar + 100 µg/mL ampicillin; incubate 37°C overnight (14–16 h).

Pick one well-isolated colony into 3–5 mL Superior Broth + 100 µg/mL ampicillin; grow 37°C, 225 rpm, overnight.

Prepare a glycerol stock from the overnight (750 µL culture + 750 µL 50% glycerol); store at −80°C. Future batches start from this stock.

Dilute the overnight culture 1:200 into 50 mL Superior Broth + 100 µg/mL ampicillin in a 250 mL flask.

Incubate at 37°C, 225 rpm, until OD600 reaches 0.4–0.7 (typically ~2 h).

Induce expression by adding anhydrotetracycline to 20 ng/mL final concentration.

Continue shaking at 37°C, 225 rpm, for 3 h (expression phase).

Harvest cells by centrifugation at 9,000 × g for 1 min at room temperature; discard supernatant.

Resuspend pellet in 1 mL cold 1X PBS by gentle pipetting or vortex.

Centrifuge again at 9,000 × g for 1 min; discard supernatant.

Resuspend in fresh cold 1X PBS to final OD600 ~6.0–7.0 (dense suspension). Confirm OD600 on a spectrophotometer.

Aliquot 3 µL (approximately 2 × 10⁷ cells) into each well of 0.2 mL PCR tube strips (8 tubes per strip).

Using an 18-gauge needle, punch a single small hole in the lid of each tube cap to allow moisture egress during drying.

Place 2–3 tube strips into a ~118 mL plastic jar filled halfway with calcium sulfate desiccant pellets. Cap the jar loosely or sealed per paper's design — the tube lid holes are the controlled egress path.

Transfer jars to a 37°C static incubator. Incubate 1–2 days until visual inspection confirms complete evaporation of liquid from all wells.

Seal each tube cap hole with hot glue or adhesive tape. Label each strip with the batch lot number.

Heat-inactivate sealed strips at 60°C for 10 minutes in a dry incubator or heat block. This inactivates the GMO host while preserving enzyme activity.

Perform activity QC on a randomly-chosen tube per batch (rehydrate, run control PCR with positive and NTC). Discard batch if QC fails.

Store QC-passed strips in a sealed container (with fresh desiccant) at room temperature (20–25°C), in a dark cabinet. Log batch lot number, production date, and QC result to the LibreBiotech Process record.

Completion Notes

Expected outcome (per 50 mL induced culture). ~8 aliquot strips (8 tubes each = 64 single-use reactions' worth of cellular reagent), each tube containing ~2 × 10⁷ cells' worth of dried material. Activity equivalent to commercial Taq in standard endpoint PCR and qPCR on the target templates tested in the reference paper.

Storage. Sealed desiccant jars in a dark cabinet at room temperature (20–25°C). Dried reagent shelf life at room temperature: at least 2.5 months (confirmed by the reference paper's stability testing). Lyophilised variants at 4°C: at least 11 months.

Activity QC (per batch, mandatory). Rehydrate 1 tube in a standard PCR master mix targeting a known amplicon of the production strain's genomic DNA (or supplied positive-control template). Run a standard 30-cycle PCR with a no-template control. Expected: clear amplicon band at the predicted size on the gel, no band in NTC. Any batch failing activity QC should be discarded and not distributed.

Batch records in LibreBiotech. Every production batch ends with:

  • A Process record with procedure_version_id and batch lot number.
  • One Sample record per aliquot strip, lot number as a sample annotation, storage location as an annotation.
  • One Assay record (activity QC) linked to the Process.
  • Upload of the gel image and QC result to the Assay.
  • Lot number printed on every tube strip and jar label.

Troubleshooting.

Symptom Likely cause Fix
Culture doesn't reach OD600 0.4–0.7 in 2 h Antibiotic over-strength or stale medium Fresh plates, freshly thawed glycerol stock, verify ampicillin final conc.
No induction (poor PCR band post-QC) aTC stock degraded or light-exposed Prepare fresh aTC stock in amber tube; protect from light
Cells aliquot unevenly Resuspension inadequate Re-vortex before each strip; pipette from the middle of the suspension
Evaporation incomplete after 2 days Desiccant saturated or humidity too high Regenerate desiccant (200°C × 2 h); replace, restart
Active reagent in some wells, not others Cap hole sealing leaked Recheck hot-glue seals; consider double-sealing with tape
Batch-wide PCR failure on activity QC Strain/plasmid issue or improper induction Confirm plasmid sequence by sequencing; retest strain; repeat with fresh transformant
References
  1. Bhadra S, Nguyen V, Torres J-A, Kar S, Fadanka S, Gandini C, Akligoh H, Paik I, Maranhao AC, Molloy J, Ellington AD (2021). Producing molecular biology reagents without purification. PLoS ONE 16(6):e0252507. DOI Link paper
  2. Bhadra S, Maranhao AC, Ellington AD (2018). A one-enzyme RT-qPCR assay for SARS-CoV-2, and procedures for reagent production. bioRxiv (cellular reagents foundational concept). DOI paper
  3. Open Bioeconomy Lab — Open Enzyme Collection and Expression Guide. Link paper
  4. Addgene Open Enzyme Collection (depositor plasmids for OpenTaq and related enzymes). Link paper
  5. pATetO-Taq expression plasmid (Addgene #153315 pOpen_taq; use per OpenMTA terms). Link paper
  6. OpenMTA — Open Material Transfer Agreement (permits commercial use and redistribution of shared plasmids). Link paper