Libre Biotech

OpenTaq Cellular Reagent Production (Evaporative Drying)

Produces a functional Taq DNA polymerase reagent without chromatographic purification, following the cellular-reagents approach of Bhadra et al. (2021, PLoS ONE, CC-BY 4.0). Overexpressing E. coli cells are harvested, aliquoted, and evaporated to dryness in a desiccant jar; the dried cells release active enzyme on rehydration in PCR master mix, eliminating cold-chain dependency. Suitable for PC1 community-lab facilities without access to a lyophiliser. Not a clinical or regulatory-grade reagent.

sample_prep https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0252507
Procedure Details
Safety & Hazards
  • PC1 (OGTR) / CL1 (HSE) containment required. This procedure produces and manipulates a genetically modified organism (E. coli BL21(DE3) carrying the pATetO-Taq expression plasmid) and cannot legally be performed in a non-certified facility. Australian operators: OGTR-certified PC1 facility. UK operators: HSE-notified CL1 premises under GMO (Contained Use) Regulations 2014.
  • BL21(DE3) safety profile. BSL-1 host; non-pathogenic; standard lab-safety precautions apply. Autoclave all liquid and solid waste before disposal.
  • Ampicillin. Handle with gloves; avoid skin contact. Waste containing ampicillin should be autoclaved and disposed of per local biosafety waste protocols.
  • Anhydrotetracycline (aTC). Chemical inducer; low acute toxicity but handle with standard gloves/eye protection. Dispose per chemical-waste pathway, not down the drain.
  • Desiccant (calcium sulfate). Mild skin/eye irritant in dust form. Handle in a ventilated area; avoid inhalation. Consult SDS.
  • Heat inactivation prior to end-user distribution. After evaporative drying, heat-treat the sealed aliquots at 60°C for 10 minutes to inactivate any residual viable cells. This is required before any release of the reagent outside the producing facility, even in RUO contexts, because the enzyme is functional after heat treatment but the GMO host is not viable.
  • No clinical application. This reagent is for research and educational use only (RUO). Not validated or approved for clinical diagnostic, therapeutic, or regulatory-grade use.
Preparation Notes

Plasmid + strain. Obtain pATetO-Taq from Addgene (search the Open Enzyme Collection) under OpenMTA terms. Obtain E. coli BL21(DE3) competent cells from NEB, Novagen, or prepare in-house by the standard calcium-chloride or TSS method. Transform and store single-colony glycerol stocks at −80°C before beginning the production run.

Media prep. Superior Broth (Athena Enzyme Systems product; in-house substitute: 32 g/L tryptone, 20 g/L yeast extract, 5 g/L NaCl, autoclaved). Ampicillin stock at 100 mg/mL in water, filter-sterilised, stored at −20°C. Anhydrotetracycline (aTC) stock at 1 mg/mL in 50% ethanol, stored at −20°C protected from light.

Desiccant preparation. Calcium sulfate pellets (or silica gel as substitute); if previously used, regenerate by baking at 200°C for 2 hours and cool in sealed container before reuse.

Bench prep. Dedicated pre-transformation and post-transformation areas. Autoclave flasks, tips, and waste. Keep glove changes strict between handling live culture and dried-reagent aliquots (once aliquots are sealed, treat them as finished product, not live culture).

LibreBiotech setup. Before starting production: create a Process in your production Study referencing this procedure version. Each production batch should be a discrete Process with its own Sample records (one Sample per aliquot strip), linked to the same parent Process. Lot number format recommended: OT-YYYYMMDD-NN (OpenTaq / date / batch-of-day).

Timing
  • Day 0 (30 min active, then overnight): Plate transformation → 37°C overnight growth.
  • Day 1 (15 min active, then overnight): Pick colony into starter culture → 37°C 225 rpm overnight.
  • Day 2 (~5 h active): Dilute 1:200 → grow to OD600 0.4–0.7 (~2 h) → induce with aTC (3 h at 37°C) → harvest, wash, aliquot (~30 min).
  • Day 2 → Day 3/4 (hands-off): Evaporation at 37°C in desiccant jars, 1–2 days until visibly dry.
  • Day 4 (~15 min active): Seal caps, heat-inactivate (60°C × 10 min), label, QC-activity test (small subset), store.
  • Total active time per batch: ~6 hours spread across 4 days. Hands-off time dominates.
  • Time-sensitive: Do not leave induced cultures at room temperature; proceed from harvest to aliquot within 30 minutes. Do not interrupt the evaporation step once started — reopening the jar mid-drying risks rehydration from ambient humidity.
Equipment (Catalog) 8
  • Microcentrifuge Centrifugation
    Specs: ≥9,000 × g, 1.5 mL and 50 mL adapters
    For harvest + wash steps
  • Micropipette Liquid handling
    Specs: P10, P200, P1000; filter tips only
    Calibrated annually
  • Spectrophotometer Measurement
    Specs: OD600 at 1 mL or cuvette volume
    For harvest-timing decisions
  • Vortex mixer Mixing
    Specs: Standard benchtop
  • Biosafety cabinet Safety
    Specs: Class II Type A2 or equivalent; PC1 certified
    Required for OGTR / HSE compliance
  • Desiccator jar Storage
    Specs: ~118 mL sealed plastic or glass jar
    Reusable; clean between batches
  • Benchtop incubator Thermal regulation
    Specs: 37°C static (no shaking), ≥5 L chamber
    Evaporation phase (1–2 days); separate from culture incubator
  • Shaking incubator Thermal regulation
    Specs: 37°C capable, 225 rpm, 250 mL flask positions
    Primary growth + induction equipment
Materials (Catalog) 8
  • E. coli BL21(DE3) (NEB) C2527I Bacterial strain
    Qty: 1 transformant
    NEB C2527I or in-house prepared competent cells
  • pATetO-Taq (Addgene) Expression plasmid
    Qty: 1 ng
    Addgene; Open Enzyme Collection; OpenMTA licensed. pOpen_taq (Addgene #153315) is an equivalent alternative.
  • Ampicillin Antibiotic
    Qty: 100 µg/mL final
    Sigma A9518 or equivalent; sterile-filtered stock at 100 mg/mL
  • Anhydrotetracycline Inducer
    Qty: 20 ng/mL final
    Light-sensitive; store stock at −20°C in amber tube
  • Drierite 8 mesh (W. A. Hammond Drierite) Desiccant
    Qty: 60 mL per jar
    Calcium sulfate pellets; regenerable at 200°C for 2h
  • 0.2 mL 8-tube PCR strip PCR tube strip
    Qty: 2-3 strips per jar
    Standard 8-tube strips with individual caps
  • Buffer Reagent
    Qty: 2 mL
    For wash + final resuspension
  • Superior Broth (Athena Enzyme Systems) 0105 Growth media
    Qty: 50 mL
    Athena ASI-4000; in-house substitute: 32/20/5 g/L tryptone/yeast/NaCl
Procedure Steps (Version 0.1.2)

Transform BL21(DE3) competent cells with 1 ng of pATetO-Taq plasmid DNA, using ampicillin 100 µg/mL as the selection antibiotic. Follow the full method in LibreBiotech procedure 60 (Heat-shock Transformation of Chemically Competent E. coli). Plate onto LB + ampicillin agar prepared per procedure 63 (Preparing LB Agar Plates with Antibiotic Selection).

Incubate transformation plates inverted at 37°C for 14–16 hours. Expect 10²–10⁴ well-isolated colonies.

Pick one well-isolated colony into 3–5 mL Superior Broth + 100 µg/mL ampicillin. Grow overnight at 37°C, 225 rpm.

Prepare a glycerol stock from the saturated overnight culture following LibreBiotech procedure 61 (Preparing a Glycerol Stock for Long-term Strain Storage). Label with batch lot, strain, plasmid, date. Store at −80°C. All future production batches start from this stock rather than fresh transformants.

Dilute the overnight culture 1:200 into 50 mL Superior Broth + 100 µg/mL ampicillin in a 250 mL flask.

Incubate at 37°C, 225 rpm, and monitor OD600 until it reaches 0.4–0.7 (typically ~2 h). Measure OD600 per LibreBiotech procedure 62 (OD600 Measurement by Spectrophotometer).

Induce expression by adding anhydrotetracycline (aTC) to a final concentration of 20 ng/mL. Continue shaking at 37°C, 225 rpm, for 3 hours.

Harvest cells by centrifugation at 9,000 × g for 1 minute at room temperature. Discard supernatant. Resuspend the pellet in 1 mL cold 1X PBS, then centrifuge again at 9,000 × g for 1 minute and discard supernatant. Repeat the wash one more time.

After the final wash, resuspend cells in cold 1X PBS to a final OD600 of ~6.0–7.0 (dense concentrated suspension). Confirm the OD600 reading per procedure 62; this is the target input density for the drying step.

Execute the full drying-to-storage workflow per LibreBiotech procedure 64 (Evaporative Drying in a Desiccator Jar). That procedure covers: 3 µL aliquotting into 0.2 mL 8-tube PCR strips, 18-gauge needle hole-punching of each cap, desiccator-jar loading with 60 mL of Drierite 8 mesh, 1–2 day evaporation at 37°C static, hole sealing, and heat-inactivation at 60°C × 10 min.

Perform activity QC on one randomly-chosen tube per batch. Rehydrate the tube with a standard PCR master mix and a positive-control template targeting a known amplicon. Run 30-cycle amplification. Confirm band at expected size; confirm no band in no-template control. Discard the entire batch if activity QC fails.

Store QC-passed strips in a sealed container with fresh desiccant, in a dark cabinet at 20–25°C. Record the batch in LibreBiotech: Process record with procedure_version_id=59.v0.1.1, lot number (format OT-YYYYMMDD-NN), one Sample record per strip with lot + storage-location annotations, one Assay record per batch for the activity QC result with the gel image attached.

For distribution / shipping: verified-QC dried strips can be shipped at room temperature in a padded envelope with an enclosed temperature-indicator strip. No cold chain required. Mark packages RUO (Research Use Only). Record distribution events as Sample annotations on each lot in LibreBiotech.

Completion Notes

Expected outcome (per 50 mL induced culture). ~8 aliquot strips (8 tubes each = 64 single-use reactions' worth of cellular reagent), each tube containing ~2 × 10⁷ cells' worth of dried material. Activity equivalent to commercial Taq in standard endpoint PCR and qPCR on the target templates tested in the reference paper.

Storage. Sealed desiccant jars in a dark cabinet at room temperature (20–25°C). Dried reagent shelf life at room temperature: at least 2.5 months (confirmed by the reference paper's stability testing). Lyophilised variants at 4°C: at least 11 months.

Activity QC (per batch, mandatory). Rehydrate 1 tube in a standard PCR master mix targeting a known amplicon of the production strain's genomic DNA (or supplied positive-control template). Run a standard 30-cycle PCR with a no-template control. Expected: clear amplicon band at the predicted size on the gel, no band in NTC. Any batch failing activity QC should be discarded and not distributed.

Batch records in LibreBiotech. Every production batch ends with:

  • A Process record with procedure_version_id and batch lot number.
  • One Sample record per aliquot strip, lot number as a sample annotation, storage location as an annotation.
  • One Assay record (activity QC) linked to the Process.
  • Upload of the gel image and QC result to the Assay.
  • Lot number printed on every tube strip and jar label.

Troubleshooting.

Symptom Likely cause Fix
Culture doesn't reach OD600 0.4–0.7 in 2 h Antibiotic over-strength or stale medium Fresh plates, freshly thawed glycerol stock, verify ampicillin final conc.
No induction (poor PCR band post-QC) aTC stock degraded or light-exposed Prepare fresh aTC stock in amber tube; protect from light
Cells aliquot unevenly Resuspension inadequate Re-vortex before each strip; pipette from the middle of the suspension
Evaporation incomplete after 2 days Desiccant saturated or humidity too high Regenerate desiccant (200°C × 2 h); replace, restart
Active reagent in some wells, not others Cap hole sealing leaked Recheck hot-glue seals; consider double-sealing with tape
Batch-wide PCR failure on activity QC Strain/plasmid issue or improper induction Confirm plasmid sequence by sequencing; retest strain; repeat with fresh transformant
References
  1. Bhadra S, Nguyen V, Torres J-A, Kar S, Fadanka S, Gandini C, Akligoh H, Paik I, Maranhao AC, Molloy J, Ellington AD (2021). Producing molecular biology reagents without purification. PLoS ONE 16(6):e0252507. DOI Link paper
  2. Bhadra S, Maranhao AC, Ellington AD (2018). A one-enzyme RT-qPCR assay for SARS-CoV-2, and procedures for reagent production. bioRxiv (cellular reagents foundational concept). DOI paper
  3. Open Bioeconomy Lab — Open Enzyme Collection and Expression Guide. Link paper
  4. Addgene Open Enzyme Collection (depositor plasmids for OpenTaq and related enzymes). Link paper
  5. pATetO-Taq expression plasmid (Addgene #153315 pOpen_taq; use per OpenMTA terms). Link paper
  6. OpenMTA — Open Material Transfer Agreement (permits commercial use and redistribution of shared plasmids). Link paper