C57_rep2_bc11
- ID
- 454
- Description
- C57 rep2 re-barcoded library (bc11) from existing cDNA
- Origin process
- #121
Annotations 1 slots
strain 1
C57BL/6J
(MGI:3028467)
Linked Sequencing Runs 1
| Platform | Run ID | Linked | Notes | |
|---|---|---|---|---|
| Nanopore | Run #63 | 2026-02-21 17:54:37 | C57_rep2_bc20 (run 3) | View in QC App |
Analysis Runs 10
| Run | Pipeline | Status | Notes | Completed |
|---|---|---|---|---|
| #111 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | failed | — | |
| #110 | Annotation Functional Annotation (TransDecoder + Pfam + SwissProt) | canceled | — | |
| #109 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | canceled | — | |
| #54 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | succeeded | C57BL/6 combined (bc19+bc20+bc21) — GENCODE M35, complete_ge... | 2026-03-01 |
| #53 | Superseded ONT Isoform Functional Annotation (superseded) | succeeded | Barcode 24 functional annotation | 2026-03-01 |
| #49 | Superseded ONT Isoform Functional Annotation (superseded) | succeeded | Barcode 20 functional annotation | 2026-03-01 |
| #42 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | succeeded | Barcode 20 analysis | 2026-03-01 |
| #41 | Transcript Discovery ONT Long-Read Transcriptomics (IsoQuant) | failed | Barcode 19 analysis | — |
| #6 | Transcript Discovery Mouse Long-Read RNA-Seq (ONT PCR-cDNA) | succeeded | Trying with the new ubuntu setup | 2026-02-24 |
| #4 | Transcript Discovery Mouse Long-Read RNA-Seq (ONT PCR-cDNA) | succeeded | First time running manually! | 2026-02-23 |
Comments
Provenance
Source samples (parents)
- C57_rep2_bc20 via origin process #97 PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24)
Derived samples (children)
- C57_DBA_pool_run3 origin process #122 Equimolar pooling of C57/DBA re-barcoded PCR-cDNA libraries (run 3)
All ancestors
- C57_rep2_bc20 via process #97 PCR-cDNA barcoding library preparation for C57/DBA mouse RNA (SQK-PCB111.24)
- 2-R via process #111 Simultaneous extraction of DNA and RNA from C57 and DBA cortex tissue using Qiagen AllPrep
- 2-C57-CORTEX via process #115 Dissection and collection of tissue from 10-week-old male mice (C57/BL6J and DBA/2J) continued
- C57-2 via process #113 Dissection and collection of tissue from 10-week-old male mice (C57/BL6J and DBA/2J)
All descendants
- C57_DBA_pool_run3 origin process #122 Equimolar pooling of C57/DBA re-barcoded PCR-cDNA libraries (run 3)
Storage
Not currently stored.
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